Detailed information of SNP:
|
SNP ID:
sf0420724609(Gbrowse)
Chromosome: chr04 Position: 20724609 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.96% | 34.04% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420724609 | T->C | INTERGENIC | None |