Detailed information of SNP:
|
SNP ID:
sf0420768189(Gbrowse)
Chromosome: chr04 Position: 20768189 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.61% | 39.39% |
| All Indica | 799 | 45.06% | 54.94% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420768189 | A->G | INTERGENIC | None |