Detailed information of SNP:
|
SNP ID:
sf0420780194(Gbrowse)
Chromosome: chr04 Position: 20780194 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.23% | 37.77% |
| All Indica | 799 | 45.18% | 54.82% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420780194 | G->A | LOC_Os04g34620(LOC_Os04g34620.1) | INTRON |