Detailed information of SNP:
|
SNP ID:
sf0420789772(Gbrowse)
Chromosome: chr04 Position: 20789772 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.56% | 5.44% |
| All Indica | 796 | 98.24% | 1.76% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420789772 | T->C | LOC_Os04g34650(LOC_Os04g34650.1) | INTRON |