Detailed information of SNP:
|
SNP ID:
sf0420841477(Gbrowse)
Chromosome: chr04 Position: 20841477 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.87% | 48.13% |
| All Indica | 799 | 25.41% | 74.59% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 39.47% | 60.53% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 211 | 12.80% | 87.20% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420841477 | C->T | INTERGENIC | None |