Detailed information of SNP:
|
SNP ID:
sf0420844742(Gbrowse)
Chromosome: chr04 Position: 20844742 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 90.63% | 9.37% |
| All Indica | 763 | 84.40% | 15.60% |
| All Japonica | 484 | 99.59% | 0.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 74.71% | 25.29% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 327 | 99.39% | 0.61% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420844742 | C->T | LOC_Os04g34710(LOC_Os04g34710.1) | Non-Synonymous SNP |