Detailed information of SNP:
|
SNP ID:
sf0420844982(Gbrowse)
Chromosome: chr04 Position: 20844982 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 53.19% | 46.81% |
| All Indica | 796 | 25.75% | 74.25% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 209 | 13.40% | 86.60% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420844982 | C->T | INTERGENIC | None |