Detailed information of SNP:
|
SNP ID:
sf0420847546(Gbrowse)
Chromosome: chr04 Position: 20847546 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1249 | 84.95% | 15.05% |
| All Indica | 763 | 84.93% | 15.07% |
| All Japonica | 368 | 82.07% | 17.93% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 347 | 74.35% | 25.65% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 243 | 75.72% | 24.28% |
| Tropical Japonica | 70 | 94.29% | 5.71% |
| Japonica Intermediate | 55 | 94.55% | 5.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420847546 | A->T | INTERGENIC | None |