Detailed information of SNP:
|
SNP ID:
sf0420848825(Gbrowse)
Chromosome: chr04 Position: 20848825 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 798 | 21.80% | 78.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 24.87% | 75.13% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420848825 | T->C | LOC_Os04g34700(LOC_Os04g34700.1) | INTRON |