Detailed information of SNP:



SNP ID: sf0420848825(Gbrowse)

Chromosome: chr04

Position: 20848825
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 55.43% 44.57%
All Indica798 21.80% 78.20%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I374 24.87% 75.13%
Indica II213 19.25% 80.75%
Indica Intermediate211 18.96% 81.04%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420848825 T->C LOC_Os04g34700(LOC_Os04g34700.1) INTRON