Detailed information of SNP:
|
SNP ID:
sf0420849747(Gbrowse)
Chromosome: chr04 Position: 20849747 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.03% | 45.97% |
| All Indica | 796 | 19.35% | 80.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 23.26% | 76.74% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 210 | 14.76% | 85.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420849747 | T->C | LOC_Os04g34700(LOC_Os04g34700.1) | INTRON |