Detailed information of SNP:
|
SNP ID:
sf0420850383(Gbrowse)
Chromosome: chr04 Position: 20850383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 55.30% | 44.70% |
| All Indica | 785 | 20.89% | 79.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 25.27% | 74.73% |
| Indica II | 207 | 19.32% | 80.68% |
| Indica Intermediate | 210 | 14.76% | 85.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420850383 | G->A | LOC_Os04g34700(LOC_Os04g34700.1) | INTRON |