Detailed information of SNP:
|
SNP ID:
sf0420851604(Gbrowse)
Chromosome: chr04 Position: 20851604 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 51.13% | 48.87% |
| All Indica | 797 | 82.94% | 17.06% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420851604 | A->G | INTERGENIC | None |