Detailed information of SNP:
|
SNP ID:
sf0420853429(Gbrowse)
Chromosome: chr04 Position: 20853429 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 94.86% | 5.14% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 445 | 89.21% | 10.79% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 320 | 99.06% | 0.94% |
| Tropical Japonica | 71 | 52.11% | 47.89% |
| Japonica Intermediate | 54 | 79.63% | 20.37% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420853429 | C->T | INTERGENIC | None |