Detailed information of SNP:
|
SNP ID:
sf0420854179(Gbrowse)
Chromosome: chr04 Position: 20854179 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.23% | 48.77% |
| All Indica | 798 | 20.55% | 79.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420854179 | G->A | INTERGENIC | None |