Detailed information of SNP:
|
SNP ID:
sf0420856170(Gbrowse)
Chromosome: chr04 Position: 20856170 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.23% | 44.77% |
| All Indica | 797 | 22.84% | 77.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 26.67% | 73.33% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 209 | 19.62% | 80.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420856170 | C->T | INTERGENIC | None |