Detailed information of SNP:
|
SNP ID:
sf0420856175(Gbrowse)
Chromosome: chr04 Position: 20856175 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.52% | 45.48% |
| All Indica | 797 | 21.83% | 78.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 26.13% | 73.87% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420856175 | G->A | INTERGENIC | None |