Detailed information of SNP:
|
SNP ID:
sf0420856487(Gbrowse)
Chromosome: chr04 Position: 20856487 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.75% | 47.25% |
| All Indica | 797 | 19.57% | 80.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 210 | 16.67% | 83.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420856487 | C->G | INTERGENIC | None |