Detailed information of SNP:
|
SNP ID:
sf0420858419(Gbrowse)
Chromosome: chr04 Position: 20858419 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 64.86% | 35.14% |
| All Indica | 781 | 85.92% | 14.08% |
| All Japonica | 432 | 23.61% | 76.39% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 80.33% | 19.67% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 307 | 11.07% | 88.93% |
| Tropical Japonica | 76 | 60.53% | 39.47% |
| Japonica Intermediate | 49 | 44.90% | 55.10% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420858419 | A->G | INTERGENIC | None |