Detailed information of SNP:
|
SNP ID:
sf0420859274(Gbrowse)
Chromosome: chr04 Position: 20859274 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.34% | 45.66% |
| All Indica | 799 | 21.15% | 78.85% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 25.07% | 74.93% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420859274 | G->A | INTERGENIC | None |