Detailed information of SNP:
|
SNP ID:
sf0420859284(Gbrowse)
Chromosome: chr04 Position: 20859284 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.80% | 45.20% |
| All Indica | 797 | 21.83% | 78.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 25.94% | 74.06% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420859284 | G->A | INTERGENIC | None |