Detailed information of SNP:
|
SNP ID:
sf0420859630(Gbrowse)
Chromosome: chr04 Position: 20859630 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.25% | 46.75% |
| All Indica | 795 | 20.50% | 79.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 24.93% | 75.07% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 209 | 19.14% | 80.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420859630 | T->C | INTERGENIC | None |