Detailed information of SNP:
|
SNP ID:
sf0420866534(Gbrowse)
Chromosome: chr04 Position: 20866534 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 61.08% | 38.92% |
| All Indica | 770 | 37.79% | 62.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 360 | 52.78% | 47.22% |
| Indica II | 209 | 22.97% | 77.03% |
| Indica Intermediate | 201 | 26.37% | 73.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420866534 | A->G | INTERGENIC | None |