Detailed information of SNP:
|
SNP ID:
sf0420873111(Gbrowse)
Chromosome: chr04 Position: 20873111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 98.58% | 1.42% |
| All Indica | 791 | 97.60% | 2.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420873111 | C->T | INTERGENIC | None |