Detailed information of SNP:
|
SNP ID:
sf0420882409(Gbrowse)
Chromosome: chr04 Position: 20882409 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 58.99% | 41.01% |
| All Indica | 776 | 29.25% | 70.75% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 365 | 41.92% | 58.08% |
| Indica II | 212 | 18.40% | 81.60% |
| Indica Intermediate | 199 | 17.59% | 82.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420882409 | A->T | INTERGENIC | None |