Detailed information of SNP:
|
SNP ID:
sf0420882448(Gbrowse)
Chromosome: chr04 Position: 20882448 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 58.98% | 41.02% |
| All Indica | 778 | 29.18% | 70.82% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 365 | 41.37% | 58.63% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 200 | 18.00% | 82.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420882448 | A->C | INTERGENIC | None |