Detailed information of SNP:
|
SNP ID:
sf0420889704(Gbrowse)
Chromosome: chr04 Position: 20889704 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 92.91% | 7.09% |
| All Indica | 791 | 100.00% | 0.00% |
| All Japonica | 487 | 83.78% | 16.22% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 95.72% | 4.28% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420889704 | C->G | INTERGENIC | None |