Detailed information of SNP:
|
SNP ID:
sf0420890297(Gbrowse)
Chromosome: chr04 Position: 20890297 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 799 | 26.66% | 73.34% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 40.27% | 59.73% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 211 | 15.64% | 84.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420890297 | T->C | INTERGENIC | None |