Detailed information of SNP:
|
SNP ID:
sf0420894698(Gbrowse)
Chromosome: chr04 Position: 20894698 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 65.77% | 34.23% |
| All Indica | 791 | 40.96% | 59.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 52.28% | 47.72% |
| Indica II | 209 | 26.79% | 73.21% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420894698 | G->T | INTERGENIC | None |