Detailed information of SNP:
|
SNP ID:
sf0420900990(Gbrowse)
Chromosome: chr04 Position: 20900990 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1299 | 95.84% | 4.16% |
| All Indica | 711 | 93.11% | 6.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 35 | 88.57% | 11.43% |
| Indica I | 359 | 97.77% | 2.23% |
| Indica II | 186 | 91.40% | 8.60% |
| Indica Intermediate | 166 | 84.94% | 15.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420900990 | C->G | INTERGENIC | None |