Detailed information of SNP:
|
SNP ID:
sf0420905258(Gbrowse)
Chromosome: chr04 Position: 20905258 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 84.11% | 15.89% |
| All Indica | 796 | 74.87% | 25.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 209 | 50.72% | 49.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420905258 | A->G | LOC_Os04g34780(LOC_Os04g34780.1) | Synonymous |