Detailed information of SNP:
|
SNP ID:
sf0420912539(Gbrowse)
Chromosome: chr04 Position: 20912539 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 796 | 70.60% | 29.40% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 209 | 41.63% | 58.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420912539 | A->G | INTERGENIC | None |