Detailed information of SNP:
|
SNP ID:
sf0420949736(Gbrowse)
Chromosome: chr04 Position: 20949736 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.74% | 35.26% |
| All Indica | 799 | 43.43% | 56.57% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420949736 | G->A | INTERGENIC | None |