Detailed information of SNP:
|
SNP ID:
sf0420951809(Gbrowse)
Chromosome: chr04 Position: 20951809 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 95.04% | 4.96% |
| All Indica | 716 | 93.30% | 6.70% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 335 | 94.03% | 5.97% |
| Indica II | 185 | 89.73% | 10.27% |
| Indica Intermediate | 196 | 95.41% | 4.59% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420951809 | A->G | LOC_Os04g34840(LOC_Os04g34840.1) | Non-Synonymous SNP |