Detailed information of SNP:
|
SNP ID:
sf0421017568(Gbrowse)
Chromosome: chr04 Position: 21017568 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 95.68% | 4.32% |
| All Indica | 774 | 93.28% | 6.72% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 200 | 87.00% | 13.00% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421017568 | T->C | INTERGENIC | None |