Detailed information of SNP:
|
SNP ID:
sf0421033226(Gbrowse)
Chromosome: chr04 Position: 21033226 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1179 | 81.59% | 18.41% |
| All Indica | 577 | 69.50% | 30.50% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 53 | 47.17% | 52.83% |
| Indica I | 272 | 74.26% | 25.74% |
| Indica II | 148 | 64.19% | 35.81% |
| Indica Intermediate | 157 | 66.24% | 33.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421033226 | G->A | INTERGENIC | None |