Detailed information of SNP:
|
SNP ID:
sf0421039509(Gbrowse)
Chromosome: chr04 Position: 21039509 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 98.49% | 1.51% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 474 | 95.99% | 4.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 77 | 79.22% | 20.78% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421039509 | G->A | INTERGENIC | None |