Detailed information of SNP:
|
SNP ID:
sf0421048425(Gbrowse)
Chromosome: chr04 Position: 21048425 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1266 | 73.93% | 26.07% |
| All Indica | 784 | 59.82% | 40.18% |
| All Japonica | 367 | 98.64% | 1.36% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 367 | 57.77% | 42.23% |
| Indica II | 210 | 65.71% | 34.29% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 234 | 98.72% | 1.28% |
| Tropical Japonica | 77 | 98.70% | 1.30% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421048425 | T->A | LOC_Os04g34920(LOC_Os04g34920.1) | INTRON |