Detailed information of SNP:
|
SNP ID:
sf0421055287(Gbrowse)
Chromosome: chr04 Position: 21055287 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.12% | 31.88% |
| All Indica | 798 | 51.25% | 48.75% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421055287 | T->G | LOC_Os04g34930(LOC_Os04g34930.3) | UTR_3_PRIME |
| sf0421055287 | T->G | LOC_Os04g34930(LOC_Os04g34930.1) | UTR_3_PRIME |