Detailed information of SNP:
|
SNP ID:
sf0421114127(Gbrowse)
Chromosome: chr04 Position: 21114127 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.28% | 4.72% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421114127 | T->C | INTERGENIC | None |