Detailed information of SNP:
|
SNP ID:
sf0421115131(Gbrowse)
Chromosome: chr04 Position: 21115131 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1242 | 81.08% | 18.92% |
| All Indica | 625 | 79.20% | 20.80% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 252 | 77.78% | 22.22% |
| Indica II | 194 | 81.96% | 18.04% |
| Indica Intermediate | 179 | 78.21% | 21.79% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421115131 | T->C | INTERGENIC | None |