Detailed information of SNP:
|
SNP ID:
sf0421115713(Gbrowse)
Chromosome: chr04 Position: 21115713 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.76% | 45.24% |
| All Indica | 797 | 34.00% | 66.00% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 37.33% | 62.67% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421115713 | A->G | INTERGENIC | None |