Detailed information of SNP:
|
SNP ID:
sf0421117543(Gbrowse)
Chromosome: chr04 Position: 21117543 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 55.12% | 44.88% |
| All Indica | 787 | 34.43% | 65.57% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 367 | 38.42% | 61.58% |
| Indica II | 212 | 24.06% | 75.94% |
| Indica Intermediate | 208 | 37.98% | 62.02% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421117543 | T->C | LOC_Os04g35030(LOC_Os04g35030.1) | UTR_3_PRIME |