Detailed information of SNP:
SNP ID:
sf0421119472(Gbrowse)
Chromosome: chr04 Position: 21119472 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 94.08% | 5.92% |
All Indica | 798 | 96.99% | 3.01% |
All Japonica | 497 | 89.13% | 10.87% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.80% | 3.20% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 210 | 94.76% | 5.24% |
Temperate Japonica | 335 | 93.43% | 6.57% |
Tropical Japonica | 94 | 88.30% | 11.70% |
Japonica Intermediate | 68 | 69.12% | 30.88% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0421119472 | G->A | LOC_Os04g35030(LOC_Os04g35030.1) | INTRON |