Detailed information of SNP:
|
SNP ID:
sf0421122146(Gbrowse)
Chromosome: chr04 Position: 21122146 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 76.01% | 23.99% |
| All Indica | 756 | 72.75% | 27.25% |
| All Japonica | 417 | 84.17% | 15.83% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 357 | 70.59% | 29.41% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 188 | 70.74% | 29.26% |
| Temperate Japonica | 280 | 90.36% | 9.64% |
| Tropical Japonica | 77 | 81.82% | 18.18% |
| Japonica Intermediate | 60 | 58.33% | 41.67% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421122146 | G->A | INTERGENIC | None |