Detailed information of SNP:
|
SNP ID:
sf0421125288(Gbrowse)
Chromosome: chr04 Position: 21125288 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.72% | 45.28% |
| All Indica | 799 | 37.55% | 62.45% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 37.33% | 62.67% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421125288 | G->A | INTERGENIC | None |