Detailed information of SNP:
|
SNP ID:
sf0421126788(Gbrowse)
Chromosome: chr04 Position: 21126788 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1296 | 93.06% | 6.94% |
| All Indica | 715 | 89.09% | 10.91% |
| All Japonica | 471 | 99.36% | 0.64% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 348 | 93.10% | 6.90% |
| Indica II | 178 | 82.02% | 17.98% |
| Indica Intermediate | 189 | 88.36% | 11.64% |
| Temperate Japonica | 310 | 99.68% | 0.32% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421126788 | T->C | INTERGENIC | None |