Detailed information of SNP:
|
SNP ID:
sf0421127762(Gbrowse)
Chromosome: chr04 Position: 21127762 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 60.84% | 39.16% |
| All Indica | 761 | 39.16% | 60.84% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 348 | 40.80% | 59.20% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 202 | 49.01% | 50.99% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421127762 | A->G | LOC_Os04g35050(LOC_Os04g35050.1) | INTRON |