Detailed information of SNP:
|
SNP ID:
sf0421130796(Gbrowse)
Chromosome: chr04 Position: 21130796 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 73.51% | 26.49% |
| All Indica | 798 | 72.43% | 27.57% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 59 | 38.98% | 61.02% |
| Indica I | 375 | 68.27% | 31.73% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421130796 | A->G | INTERGENIC | None |