Detailed information of SNP:
|
SNP ID:
sf0421137864(Gbrowse)
Chromosome: chr04 Position: 21137864 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 50.82% | 49.18% |
| All Indica | 789 | 31.18% | 68.82% |
| All Japonica | 497 | 79.88% | 20.12% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 372 | 29.57% | 70.43% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 204 | 41.67% | 58.33% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421137864 | A->G | INTERGENIC | None |