Detailed information of SNP:
|
SNP ID:
sf0421172722(Gbrowse)
Chromosome: chr04 Position: 21172722 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.10% | 45.90% |
| All Indica | 797 | 71.27% | 28.73% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 22.99% | 77.01% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0421172722 | T->C | INTERGENIC | None |